Internal method

Internal method

search_FBN_core(
  fbnGeneCube,
  genes,
  useParallel = FALSE,
  threshold_confidence = 1,
  threshold_error = 0,
  threshold_support = 1e-04,
  maxFBNRules = 5
)

Arguments

fbnGeneCube

A pre constructed Orchard cube

genes

The target genes in the output

useParallel

An option turns on parallel

threshold_confidence

A threshold of confidence (between 0 and 1) that used to filter the Fundamental Boolean functions

threshold_error

A threshold of error rate (between 0 and 1) that used to filter the Fundamental Boolean functions

threshold_support

A threshold of support (between 0 and 1) that used to filter the Fundamental Boolean functions

maxFBNRules

The maximum rules per type (Activation and Inhibition) per gene can be mined or filtered, the rest will be discarded