A function to plot the Fundamental boolean networks

A function to plot the Fundamental boolean networks

plotNetwork(
  FBNNetwork,
  target_genes = c(),
  type = c("static", "staticSlice", "dynamic", "forward_1a", "forward_2a",
    "forward_3a", "forward_4a", "backward_1a", "backward_2a", "forward_1b", "forward_2b",
    "forward_3b", "forward_4b", "backward_1b", "backward_2b"),
  expand_level = 2,
  output_network = FALSE,
  timeseries_matrix = NULL,
  start_time_point = 1,
  end_time_point = 1,
  target_time_point = 1
)

Arguments

FBNNetwork

The FBN networks

target_genes

A list of target genes

type

The visualization type

expand_level

The level of expandation

output_network

Optional, if TRUE, then output the FBN Network

timeseries_matrix

The timeseries matrix that used to plot dynamic networks.

start_time_point

The start time point

end_time_point

The end time point

target_time_point

The target time point