build Probability Tree On the targetGene

build Probability Tree On the targetGene

buildProbabilityTreeOnTargetGene(
  targetGene,
  mainParameters,
  genes,
  matchedgenes,
  matchedexpression,
  maxK = 4L,
  temporal = 1L,
  targetCounts = NULL,
  findPositiveRegulate = FALSE,
  findNegativeRegulate = FALSE
)

Arguments

targetGene

The target gene

mainParameters

An environment variable holds all input data

genes

All conditional genes

matchedgenes

processed genes

matchedexpression

matched the expression of an interaction

maxK

The maximum level that can be drilled in.

temporal

The temporal time steps

targetCounts

Counts the number of target gene in the data

findPositiveRegulate

Optional if TRUE find positive regulation only

findNegativeRegulate

Optional if TRUE find negative regulation only